Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012794.1 Corchorus capsularis cultivar CVL-1 contig12815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73327

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13766--13804
19
2.1
19
100
0
78
15
25
25
33
1.95
18639--18682
21
2.1
21
83
8
54
20
22
18
38
1.93
29145--29206
29
2.1
29
96
0
115
35
17
6
40
1.76
37479--37535
30
1.9
30
85
0
78
31
15
28
24
1.96
44432--44533
38
2.7
38
92
0
168
21
18
38
21
1.94
44544--44574
6
5.2
6
100
0
62
16
0
35
48
1.46
47906--48044
38
3.7
38
95
0
235
22
20
36
20
1.95
48055--48079
6
4.2
6
100
0
50
16
0
36
48
1.46
48768--48808
21
2.0
21
85
0
55
14
24
17
43
1.86
49931--50015
6
13.7
6
80
11
73
82
2
7
8
0.92
49927--50017
12
7.4
12
80
12
96
81
2
8
7
0.96
49936--50022
34
2.5
34
75
1
93
80
2
9
8
0.99
63012--63094
41
2.0
41
97
0
157
32
38
19
9
1.84
63773--63812
21
1.9
21
90
10
64
50
17
15
17
1.79
65093--65142
21
2.4
21
86
0
64
6
36
2
56
1.36
66158--66189
11
2.8
12
86
13
50
34
0
18
46
1.49
66769--66804
18
2.1
17
94
5
63
11
16
8
63
1.49

Tables:   1

The End!