Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012795.1 Corchorus capsularis cultivar CVL-1 contig12816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17042

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--86
2
43.0
2
75
25
77
48
1
1
49
1.17
1233--1335
32
3.2
32
83
5
120
21
23
20
34
1.96
1836--1867
11
2.8
12
86
13
50
34
0
18
46
1.49
9544--9637
48
1.9
49
82
6
120
32
30
14
21
1.94
13437--13474
2
19.5
2
84
15
53
47
2
0
50
1.15
13437--13477
14
3.2
13
90
10
59
46
2
0
51
1.14
14720--14794
16
4.8
16
80
3
89
41
40
12
6
1.68
14720--14794
31
2.4
31
86
6
98
41
40
12
6
1.68
15266--15304
11
3.5
11
89
0
60
43
7
5
43
1.55
15262--15304
22
2.0
22
95
0
77
44
6
4
44
1.52
16812--16866
16
3.4
17
85
7
69
29
50
20
0
1.48

Tables:   1

The End!