Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012796.1 Corchorus capsularis cultivar CVL-1 contig12817, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17632

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
343--375
17
1.9
17
93
0
57
27
48
21
3
1.64
365--471
16
6.8
16
90
2
171
41
38
14
5
1.70
339--376
6
6.5
6
81
6
51
31
44
21
2
1.66
365--485
32
3.8
32
87
1
145
38
41
15
4
1.69
656--688
2
16.0
2
93
6
57
48
3
0
48
1.17
1285--1314
15
1.9
16
93
6
53
50
13
0
36
1.42
5427--5495
15
4.6
15
83
7
77
8
26
30
34
1.86
6308--6372
26
2.4
26
92
5
103
35
13
1
49
1.52
10014--10059
3
15.7
3
95
4
85
34
0
0
65
0.93
10117--10152
15
2.4
15
100
0
72
13
13
8
63
1.50
16777--16810
5
7.0
5
86
6
52
17
2
0
79
0.86
16763--16810
13
3.4
14
82
5
53
16
8
0
75
1.04

Tables:   1

The End!