Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012797.1 Corchorus capsularis cultivar CVL-1 contig12818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44541

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
352--427
31
2.5
29
80
14
82
48
0
1
50
1.09
6032--6072
17
2.4
17
87
4
55
51
0
7
41
1.30
6106--6142
13
3.0
13
80
15
51
40
0
5
54
1.24
7772--7804
16
2.1
16
94
0
57
54
36
3
6
1.41
9521--9559
11
3.5
11
82
6
51
35
0
0
64
0.94
9733--9804
32
2.2
32
87
4
101
47
18
11
23
1.80
13154--13344
105
1.8
105
83
2
258
34
28
8
28
1.87
18254--18283
6
5.0
6
100
0
60
50
50
0
0
1.00
24215--24274
22
2.8
22
80
14
63
35
5
3
56
1.37
25188--25230
7
6.0
7
78
5
50
48
2
0
48
1.14
29968--30013
22
2.1
22
88
4
67
23
10
4
60
1.47
30149--30185
19
2.0
18
89
5
56
40
2
21
35
1.68
31723--31762
21
1.9
21
100
0
80
22
15
30
32
1.94
31911--31943
17
1.9
17
100
0
66
27
6
36
30
1.81
37738--37772
13
2.7
13
100
0
70
20
8
8
62
1.49
37769--37800
6
5.5
6
96
3
57
31
0
12
56
1.37
40951--41021
32
2.2
32
94
0
124
18
50
18
12
1.77
43218--43242
10
2.5
10
100
0
50
48
20
8
24
1.76
44162--44196
13
2.7
13
100
0
70
20
8
8
62
1.49
44193--44224
6
5.5
6
96
3
57
31
0
12
56
1.37

Tables:   1

The End!