Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012798.1 Corchorus capsularis cultivar CVL-1 contig12819, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14349

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
951--977
10
2.7
10
100
0
54
48
7
0
44
1.31
1031--1073
19
2.2
20
87
4
61
13
2
4
79
1.00
1949--1977
10
3.0
10
95
5
51
51
31
10
6
1.62
2831--2875
21
2.1
21
100
0
90
4
8
8
77
1.10
3624--3708
38
2.2
37
85
4
107
29
17
20
32
1.95
3618--3805
97
1.9
97
82
4
236
31
17
18
32
1.94
3655--3767
59
1.9
59
85
3
156
31
20
17
30
1.96
3714--4143
38
11.3
39
81
5
454
29
17
16
35
1.93
3714--4396
114
6.1
115
80
9
673
28
19
17
34
1.95
4117--4169
24
2.2
24
93
0
88
20
20
20
37
1.94
4141--4398
38
6.8
38
85
2
331
27
22
18
32
1.97
4004--4271
137
1.9
138
87
0
385
27
20
16
35
1.94
3927--4347
213
2.0
214
86
0
583
28
19
16
35
1.94
13793--13821
10
3.0
10
95
5
51
51
31
10
6
1.62

Tables:   1

The End!