Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012802.1 Corchorus capsularis cultivar CVL-1 contig12823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45119

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
568--648
29
2.7
29
80
14
85
24
24
18
32
1.97
9987--10301
21
15.1
20
75
8
254
29
13
22
34
1.92
10049--10285
82
2.9
84
81
4
221
29
12
22
34
1.91
10350--10402
21
2.5
21
84
0
70
33
20
13
32
1.91
17830--17864
3
11.7
3
100
0
70
65
0
0
34
0.93
19806--19846
20
2.1
20
86
4
57
48
0
2
48
1.14
22103--22137
18
1.9
18
94
0
61
17
17
25
40
1.90
28097--28137
5
8.2
5
100
0
82
19
39
19
21
1.93
32515--32640
57
2.2
57
94
2
218
50
7
18
23
1.73
36026--36095
26
2.7
26
93
0
113
35
10
20
34
1.86
42771--42798
2
14.0
2
100
0
56
50
0
0
50
1.00
43526--43558
10
3.3
10
100
0
66
57
33
0
9
1.30

Tables:   1

The End!