genome.fa.s12803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012803.1 Corchorus capsularis cultivar CVL-1 contig12824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150847

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5823--5907	41	2.1	40	91	2	134	34	20	7	38	1.79
6084--6596	256	2.0	256	92	0	855	31	19	19	29	1.96
6680--6735	25	2.2	26	90	3	87	28	17	8	44	1.79
12119--12156	19	2.0	20	85	15	53	28	5	2	63	1.30
12322--12408	44	2.0	43	84	6	113	36	10	17	35	1.84
12320--12460	22	6.3	22	72	9	97	31	9	20	38	1.84
12560--12877	22	14.3	21	70	18	132	41	9	15	33	1.80
12709--12899	44	4.4	44	73	7	140	43	9	13	33	1.75
12983--13453	44	10.8	44	70	11	200	38	10	14	36	1.82
12997--13542	22	25.0	22	65	14	105	39	10	14	35	1.81
13193--13250	23	2.5	23	88	5	82	39	6	12	41	1.69
15800--15825	11	2.4	11	100	0	52	46	11	0	42	1.40
16916--16974	13	4.5	13	72	10	50	71	1	23	3	1.11
24132--24319	98	1.9	98	100	0	376	22	21	13	42	1.88
27336--27370	17	2.1	17	100	0	70	5	11	34	48	1.63
34142--34386	137	1.8	135	92	3	420	27	22	13	36	1.91
36287--36351	32	2.0	32	82	5	78	43	12	16	27	1.84
38126--38167	20	2.2	19	91	4	66	45	0	2	52	1.13
38044--38169	20	6.1	21	66	24	65	47	0	5	46	1.25
44801--44827	6	4.5	6	100	0	54	29	0	0	70	0.88
48236--48261	7	3.7	7	100	0	52	0	15	11	73	1.11
48713--48904	31	6.5	31	75	14	163	33	26	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71583--71634	22	2.3	22	80	3	59	40	19	11	28	1.86
71707--71979	22	12.9	23	70	15	130	32	16	8	42	1.79
71924--71974	19	2.6	20	90	6	86	25	17	11	45	1.83
72055--72220	88	1.9	88	81	5	201	33	12	9	43	1.75
72055--72441	22	17.5	22	69	17	114	34	14	9	41	1.79
72364--72468	44	2.4	44	78	10	108	33	18	10	38	1.85
72504--72569	22	2.9	22	86	4	78	42	21	6	30	1.77
72538--72643	44	2.3	46	81	13	123	36	15	13	34	1.86
72562--72691	22	6.0	21	70	17	95	37	16	11	33	1.85
73064--73134	30	2.4	30	83	11	92	57	2	11	28	1.47
73532--73572	15	2.5	17	76	11	50	48	29	14	7	1.71
73951--74001	22	2.3	21	78	18	50	54	0	7	37	1.29
75066--75361	109	2.7	109	90	4	432	49	1	11	37	1.50
96407--96443	5	7.4	5	93	0	56	18	24	21	35	1.96
100917--100963	23	2.0	23	91	0	76	38	12	12	36	1.82
102705--102744	2	20.0	2	100	0	80	50	0	0	50	1.00
107931--107962	7	4.6	7	96	0	55	37	12	34	15	1.85
108721--108781	32	1.9	32	93	0	104	44	6	14	34	1.72
123627--123669	22	1.9	23	85	4	61	11	4	9	74	1.20
125333--125359	7	3.9	7	100	0	54	29	14	14	40	1.86
126072--126119	22	2.2	22	100	0	96	18	0	29	52	1.46
146400--146516	33	3.5	33	84	4	139	11	24	41	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146396--146536	66	2.1	66	80	7	153	11	25	40	22	1.87
147062--147469	155	2.6	156	81	5	459	34	20	14	31	1.93
150540--150805	62	4.3	62	88	4	389	35	12	15	36	1.86
150540--150805	122	2.2	123	89	4	396	35	12	15	36	1.86

Tables:   1

The End!