Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012805.1 Corchorus capsularis cultivar CVL-1 contig12826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39506

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
651--699
16
3.2
16
66
16
50
48
10
10
30
1.70
5093--5237
63
2.4
61
84
3
175
27
51
8
11
1.68
5190--5284
42
2.3
42
86
0
145
18
55
11
13
1.68
5265--5414
27
5.6
27
89
3
212
28
55
5
10
1.56
5254--5414
81
2.0
81
87
2
234
26
55
5
11
1.57
5382--5451
36
1.9
36
94
0
122
25
57
7
10
1.57
11383--11766
89
4.4
87
71
14
302
36
15
25
22
1.94
11383--11869
89
5.6
87
69
17
277
37
16
24
21
1.93
13247--13286
12
3.3
12
83
10
55
32
0
2
65
1.06
13249--13295
24
2.0
24
83
8
60
34
2
4
59
1.29
14553--14592
18
2.3
18
91
4
64
42
22
0
35
1.54
14553--14592
9
4.6
9
81
6
55
42
22
0
35
1.54
14575--15578
175
5.8
175
83
3
1238
24
25
14
35
1.93
14575--15578
347
2.9
347
87
3
1401
24
25
14
35
1.93
19525--19567
22
2.0
22
85
0
59
60
2
32
4
1.30
20176--20218
16
2.7
16
81
0
50
32
37
18
11
1.87
20745--20775
15
2.1
15
93
0
53
54
3
6
35
1.42
24769--24857
45
1.9
46
86
6
126
25
20
19
34
1.96
27051--27083
5
6.8
5
93
6
59
21
0
0
78
0.75
32688--32727
16
2.4
17
95
4
73
50
0
0
50
1.00
33134--33168
3
11.0
3
93
6
52
37
0
0
62
0.95
33540--33581
16
2.7
15
89
10
66
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33550--33578
14
2.0
15
93
6
51
48
0
0
51
1.00

Tables:   1

The End!