Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012807.1 Corchorus capsularis cultivar CVL-1 contig12828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9938

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1348--1509
78
2.0
79
91
5
263
32
4
7
54
1.49
1348--1509
40
4.0
40
91
5
265
32
4
7
54
1.49
1568--1701
67
2.0
67
100
0
268
43
14
19
22
1.87
2495--2538
20
2.1
21
87
8
63
61
11
0
27
1.30
3589--3635
11
4.3
11
83
5
60
40
4
8
46
1.54
3589--3635
22
2.1
22
92
0
76
40
4
8
46
1.54
3770--3810
2
19.5
2
85
9
55
46
0
7
46
1.30
6162--6197
8
4.6
8
93
3
56
0
0
13
86
0.58
6905--6983
31
2.5
31
81
0
104
35
12
17
34
1.88
8415--8445
16
1.9
16
93
0
53
41
12
0
45
1.42
8607--8655
3
16.3
3
100
0
98
65
0
0
34
0.93

Tables:   1

The End!