Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012809.1 Corchorus capsularis cultivar CVL-1 contig12830, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78938

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
824--864
21
2.0
21
90
9
66
56
2
2
39
1.26
5307--5332
7
3.7
7
100
0
52
11
0
26
61
1.30
7171--7200
2
15.0
2
92
0
51
50
3
46
0
1.18
11320--11371
6
8.3
6
91
8
86
1
1
34
61
1.18
29883--29909
6
4.5
6
100
0
54
0
37
14
48
1.45
34219--34284
5
13.4
5
84
6
82
80
1
15
3
0.91
42886--42914
12
2.3
13
94
5
51
82
0
17
0
0.66
44354--44385
2
17.0
2
87
12
50
46
0
0
53
1.00
54761--54787
2
13.5
2
100
0
54
51
0
0
48
1.00
57084--57115
7
4.9
7
85
14
50
28
0
12
59
1.34
59957--60109
15
9.8
15
68
13
78
57
9
32
0
1.35
59971--60109
30
4.4
32
78
10
137
58
8
32
0
1.34
59971--60048
18
4.4
18
71
11
63
60
8
30
0
1.28
59955--60111
33
4.8
32
70
16
92
57
8
33
0
1.35
63278--63325
24
2.0
24
84
8
62
33
12
8
45
1.72
66464--66511
24
2.0
24
91
0
78
33
8
8
50
1.63
70160--70193
2
17.0
2
100
0
68
50
0
0
50
1.00
70536--70591
22
2.5
22
80
13
69
39
14
12
33
1.83
70596--70662
23
2.9
23
88
0
98
38
17
4
38
1.70
70497--70967
220
2.1
220
97
0
881
36
16
8
39
1.79
70756--70811
22
2.5
22
80
13
69
39
14
12
33
1.83
70816--70882
23
2.9
23
88
0
98
38
17
4
38
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70909--71070
22
7.5
22
68
15
97
34
14
8
41
1.77
70556--71070
44
11.8
44
69
15
187
35
15
8
39
1.78
71176--71226
22
2.3
22
89
0
75
37
9
7
45
1.67
71250--71334
44
2.0
43
88
2
125
37
10
8
43
1.69
71420--71558
22
6.4
21
73
13
86
35
20
7
35
1.82
71653--71774
22
5.6
21
70
7
73
39
14
9
36
1.80
71646--71745
44
2.3
43
81
8
121
37
17
10
36
1.83
71672--71774
44
2.3
44
80
9
113
38
14
9
36
1.79
71995--72323
167
2.0
164
80
8
371
44
8
9
37
1.68
72424--72519
38
2.6
38
79
9
117
54
9
20
15
1.69
72644--72708
31
2.1
31
88
8
98
46
7
20
26
1.77
73113--73139
14
1.9
14
100
0
54
44
3
0
51
1.19
76006--76048
13
3.2
13
84
12
59
58
11
0
30
1.34
76017--76046
15
2.0
15
100
0
60
53
13
0
33
1.40
78847--78875
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!