Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012812.1 Corchorus capsularis cultivar CVL-1 contig12833, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42807

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3292--3346
20
2.8
20
81
8
60
49
3
1
45
1.30
8726--8773
23
2.0
24
96
4
89
47
0
8
43
1.33
8860--8893
16
2.1
17
89
10
54
44
0
2
52
1.16
10120--11163
576
1.8
569
83
6
1386
34
13
15
36
1.87
12887--13080
99
2.0
99
84
4
257
20
20
26
32
1.97
14646--14721
29
2.6
29
80
2
89
19
23
15
40
1.90
14882--14958
29
2.6
29
87
2
118
38
18
23
19
1.93
14999--16105
329
3.4
326
79
8
1105
32
14
15
37
1.88
14999--16207
331
3.7
326
77
10
853
32
14
15
37
1.88
14999--16207
330
3.7
326
77
9
878
32
14
15
37
1.88
16428--16531
48
2.2
48
82
3
120
26
22
22
28
1.99
16792--16862
29
2.4
29
79
9
72
18
22
14
45
1.85
21172--21233
33
1.9
32
86
3
88
12
41
33
11
1.79
26739--26865
62
2.0
62
87
0
182
33
12
10
43
1.76
26964--27051
45
2.0
45
86
0
122
42
14
9
34
1.78
27101--27374
22
12.5
22
72
13
158
34
15
9
40
1.79
27103--27204
23
4.5
23
83
3
109
38
13
7
40
1.74
27274--27437
22
7.8
22
66
20
64
37
13
9
40
1.76
27453--27581
22
5.9
22
73
5
82
33
12
10
43
1.77
27677--27753
38
2.1
38
85
7
104
61
11
15
11
1.58
27871--27937
31
2.1
32
86
10
102
49
5
13
31
1.66
27878--27943
31
2.1
31
91
5
107
50
6
16
27
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32199--32246
16
3.0
16
90
0
78
33
20
16
29
1.95
34027--34582
288
1.9
286
89
0
851
30
17
19
32
1.95
34689--34891
68
3.0
68
93
0
343
42
11
15
30
1.82

Tables:   1

The End!