Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012814.1 Corchorus capsularis cultivar CVL-1 contig12835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91393

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
371--468
33
3.0
33
100
0
196
21
20
9
48
1.76
8127--8195
30
2.3
29
82
7
86
43
20
17
18
1.88
11326--11372
19
2.3
20
89
7
69
38
23
2
36
1.67
11943--12012
29
2.3
30
80
11
81
21
18
18
41
1.91
17264--17289
2
13.0
2
100
0
52
50
0
0
50
1.00
26105--26144
10
4.0
10
96
0
71
10
42
10
37
1.72
28679--28723
21
2.1
21
83
0
54
15
33
13
37
1.86
29050--29253
32
6.3
32
94
2
320
13
28
43
15
1.84
29756--29799
22
2.0
22
82
8
54
38
11
6
43
1.67
29755--29896
60
2.3
60
90
2
212
31
14
9
44
1.77
29876--30408
22
24.6
21
69
12
224
35
16
10
38
1.82
30490--30567
22
3.5
22
85
5
86
32
12
10
44
1.76
30516--30625
58
1.9
58
84
0
148
30
13
10
45
1.76
30574--30626
22
2.4
22
81
6
63
33
9
11
45
1.72
31567--31612
16
2.9
16
75
12
58
36
34
8
19
1.83
32633--32709
28
2.7
27
86
7
109
54
0
3
41
1.19
32942--32997
2
30.5
2
74
16
50
44
1
0
53
1.11
32942--32999
9
6.2
9
75
15
55
44
1
0
53
1.10
33747--33789
20
2.2
19
83
4
50
13
23
2
60
1.45
46111--46207
32
3.0
32
100
0
194
27
9
22
40
1.85
54088--54115
2
14.0
2
100
0
56
50
0
0
50
1.00
55716--56592
282
3.1
280
85
5
1193
41
14
12
31
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56445--57506
199
5.2
200
83
6
1255
44
12
12
31
1.79
56428--57504
99
10.6
100
75
9
713
44
12
12
30
1.79
56738--57308
211
2.7
211
93
1
954
45
12
12
29
1.79
60779--61001
97
2.3
100
83
5
285
44
9
12
32
1.75
61950--62175
100
2.3
100
86
4
314
45
9
11
33
1.73
72689--72723
18
1.9
18
100
0
70
34
0
5
60
1.21
72819--72902
39
2.1
41
91
4
136
53
4
10
30
1.56
78838--78875
20
1.9
20
88
0
58
42
10
0
47
1.38
84212--84244
16
2.1
16
94
0
57
39
12
12
36
1.80
86011--86056
21
2.1
22
88
4
67
17
28
8
45
1.78
86251--86281
9
3.3
9
95
4
53
29
0
0
70
0.87
86240--86281
10
4.1
10
87
12
59
28
0
2
69
1.01
86327--86398
11
5.4
15
66
25
54
33
0
11
55
1.35
86331--86398
26
2.6
26
92
0
118
35
0
10
54
1.35
86408--86466
25
2.4
25
91
5
95
40
0
23
35
1.55
88574--88624
17
2.8
19
80
11
54
33
1
0
64
1.05
88574--88627
19
3.0
19
81
10
60
33
1
0
64
1.04
88747--88771
13
1.9
13
100
0
50
32
0
20
48
1.50
88911--88947
2
18.5
2
100
0
74
48
0
0
51
1.00
90091--90142
22
2.4
22
81
9
63
38
11
5
44
1.65
90420--90870
22
20.7
21
65
17
102
37
14
8
39
1.76

Tables:   1

The End!