Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012818.1 Corchorus capsularis cultivar CVL-1 contig12839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70899

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2472--2521
25
2.0
25
84
0
64
30
18
22
30
1.97
3590--3708
60
2.0
60
93
0
202
32
21
20
26
1.97
3763--3898
31
4.5
31
78
7
152
26
19
17
36
1.94
4455--4481
2
13.5
2
100
0
54
51
0
0
48
1.00
5958--5983
2
13.0
2
100
0
52
50
0
0
50
1.00
7335--7359
1
25.0
1
100
0
50
0
0
0
100
0.00
9863--9893
2
15.5
2
100
0
62
51
0
0
48
1.00
14855--15652
398
2.0
397
99
0
1562
35
12
14
38
1.84
16099--16183
42
2.0
42
90
0
134
35
17
15
31
1.91
23363--23387
13
1.9
13
100
0
50
88
0
12
0
0.53
40310--40379
34
2.1
34
94
2
124
27
14
12
45
1.81
46676--46700
1
25.0
1
100
0
50
100
0
0
0
0.00
48891--49291
211
1.9
211
86
0
568
36
18
16
27
1.93
50665--50775
52
2.1
52
100
0
222
51
10
18
19
1.75
56539--56750
91
2.3
92
87
4
315
33
11
19
35
1.87
58313--58364
18
2.9
18
88
0
77
28
30
17
23
1.97
62678--62771
30
3.1
30
78
14
113
20
13
28
37
1.91
62690--62855
58
2.9
58
79
15
186
20
14
25
39
1.91

Tables:   1

The End!