genome.fa.s12821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012821.1 Corchorus capsularis cultivar CVL-1 contig12842, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118223

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275--1318	23	1.9	23	81	9	54	45	0	13	40	1.44
2156--2197	21	2.0	21	81	9	50	19	9	7	64	1.46
26247--26295	24	2.0	24	100	0	98	40	30	4	24	1.74
26325--26556	45	5.2	45	96	0	428	18	32	4	43	1.71
26371--26442	21	3.3	21	62	11	54	18	30	4	47	1.67
26483--26557	24	3.2	24	64	17	59	18	33	4	44	1.69
32414--32543	62	2.1	62	79	2	145	18	20	26	33	1.96
32457--32593	31	4.7	31	80	15	157	18	18	27	35	1.94
32524--32565	22	1.9	22	100	0	84	19	16	26	38	1.92
33763--33799	17	2.1	18	90	10	58	32	0	8	59	1.27
54089--54179	47	1.9	48	95	2	166	34	23	12	30	1.91
59722--59920	31	6.5	31	75	18	161	37	17	18	27	1.93
59757--59860	29	3.5	29	71	14	95	38	16	17	27	1.91
59726--59888	60	2.7	58	88	3	227	37	17	18	26	1.93
59952--60052	31	3.3	31	94	0	175	23	19	20	35	1.96
59952--60174	60	3.7	60	80	7	193	27	17	19	35	1.94
63937--64129	36	5.4	36	87	4	250	31	22	21	24	1.98
64107--64153	24	2.0	24	91	0	76	34	25	21	19	1.96
64080--64208	60	2.2	58	84	8	161	31	25	20	22	1.98
77639--77668	3	10.0	3	92	0	51	36	0	0	63	0.95
78968--79006	2	19.5	2	100	0	78	51	0	0	48	1.00
79800--79907	32	3.4	32	81	11	98	25	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79831--79907	32	2.4	32	93	0	127	23	20	28	27	1.99
81932--81970	4	9.8	4	94	0	69	25	2	23	48	1.63
85822--85868	5	9.6	5	95	2	78	85	0	14	0	0.61
96992--97058	33	2.0	33	97	0	125	26	13	31	28	1.94
103182--103273	30	3.1	30	90	3	132	13	18	30	38	1.89
115862--115901	20	2.0	20	100	0	80	45	5	20	30	1.72
116037--116120	31	2.7	31	96	0	150	17	33	36	11	1.87
116565--116630	27	2.4	27	82	0	69	16	10	36	36	1.84
116620--116755	54	2.5	54	96	1	247	23	20	29	26	1.99

Tables:   1

The End!