Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012822.1 Corchorus capsularis cultivar CVL-1 contig12843, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33237
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:3442 original size:17 final size:17

Alignment explanation


    Indices: 3383--3448  Score: 55
    Period size: 17  Copynumber: 3.8  Consensus size: 17

       3373 CATAAACCTC

                             
       3383 TCTCTTC-TTC-TTTCT
          1 TCTCTTCTTTCTTTTCT

                 *             *
       3398 TCATCATCTTTTCTGTTTCC
          1 TC-TCTTC-TTTCT-TTTCT

            *  *             
       3418 CCTGTTCTTTCTTTTCT
          1 TCTCTTCTTTCTTTTCT

                          
       3435 TCTCTTCTTTCTTT
          1 TCTCTTCTTTCTTT

       3449 ATCCCTCTCA


Statistics
Matches: 38,  Mismatches: 8, Indels: 8
        0.70            0.15        0.15

Matches are distributed among these distances:
  15    2  0.05
  16    4  0.11
  17   16  0.42
  18    8  0.21
  19    3  0.08
  20    5  0.13

ACGTcount: A:0.03, C:0.30, G:0.03, T:0.64


Consensus pattern (17 bp):   
TCTCTTCTTTCTTTTCT

Found at i:12975 original size:16 final size:16

Alignment explanation


    Indices: 12954--12988  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

      12944 TTCTTCACAA

                            
      12954 AATATAAGCTCATAAC
          1 AATATAAGCTCATAAC

                            
      12970 AATATAAGCTCATAAC
          1 AATATAAGCTCATAAC

               
      12986 AAT
          1 AAT

      12989 GTTCTATCAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26


Consensus pattern (16 bp):   
AATATAAGCTCATAAC
Done.