Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012823.1 Corchorus capsularis cultivar CVL-1 contig12844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66547

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2694--2849
78
2.0
78
83
2
197
30
18
26
24
1.98
7864--7894
15
2.0
16
93
6
55
58
25
0
16
1.38
22711--22748
11
3.5
11
89
10
51
39
0
2
57
1.12
24710--24761
12
4.2
12
80
4
59
36
13
21
28
1.91
24710--24761
25
2.1
24
89
3
77
36
13
21
28
1.91
25748--25783
10
3.6
10
92
0
63
30
5
22
41
1.76
25745--25783
20
2.0
20
100
0
78
30
5
20
43
1.73
25953--25996
21
2.0
24
86
13
67
59
22
4
13
1.53
30705--30767
31
2.0
31
96
0
117
44
22
14
19
1.86
32520--32580
31
2.0
31
84
6
81
45
3
18
32
1.65
35503--35533
2
15.5
2
100
0
62
48
0
0
51
1.00
43954--44031
30
2.6
30
95
2
140
46
11
11
30
1.76
47945--47973
12
2.3
13
94
5
51
6
10
0
82
0.83
51606--51649
21
2.1
21
83
8
54
18
25
6
50
1.71
51845--51944
33
3.0
33
77
1
101
19
33
34
14
1.91
54531--54584
2
27.5
2
76
23
53
50
3
1
44
1.30
59563--59676
56
2.0
56
100
0
228
42
11
11
35
1.77
60388--60413
8
3.2
8
100
0
52
53
0
46
0
1.00
66515--66547
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!