Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012824.1 Corchorus capsularis cultivar CVL-1 contig12845, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  231002

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
588--638
17
3.1
16
86
8
66
21
21
21
35
1.96
2602--2647
1
46.0
1
100
0
92
0
0
0
100
0.00
5590--5637
25
1.9
25
100
0
96
33
8
35
22
1.84
11890--11929
17
2.4
17
91
0
62
0
12
15
72
1.12
14785--14893
52
2.0
54
87
8
161
21
5
23
49
1.70
19747--19817
37
1.9
37
94
0
124
36
16
8
38
1.80
21014--21075
31
2.0
32
90
3
99
33
19
6
40
1.77
39532--39561
2
15.5
2
93
6
53
53
0
46
0
1.00
46616--46648
11
3.1
11
91
4
50
6
39
0
54
1.25
53343--53372
1
30.0
1
93
0
51
96
0
3
0
0.21
54642--54673
2
16.0
2
100
0
64
50
0
0
50
1.00
55293--55327
14
2.5
14
95
0
61
40
0
60
0
0.97
64834--64880
2
24.0
2
86
4
69
48
4
0
46
1.21
74359--74383
13
1.9
13
100
0
50
72
0
16
12
1.13
76844--76872
13
2.2
13
100
0
58
24
6
13
55
1.63
77954--77981
12
2.3
12
100
0
56
0
7
0
92
0.37
80378--80442
31
2.1
31
91
0
103
20
13
24
41
1.88
82003--82055
27
2.0
25
82
17
63
39
9
1
49
1.46
82023--82069
19
2.5
19
75
3
51
40
4
0
55
1.19
82039--82088
15
3.6
15
69
20
54
34
8
0
58
1.28
82039--82100
15
4.3
15
70
17
51
37
6
1
54
1.36
82136--82231
38
2.6
37
78
3
120
14
17
10
57
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83373--83418
19
2.3
20
92
7
85
43
8
21
26
1.81
83408--83632
22
10.5
22
73
15
132
40
8
11
39
1.71
94810--94896
45
1.9
45
83
0
111
24
17
40
18
1.91
102171--102208
11
3.5
11
85
10
51
57
2
0
39
1.12
112997--113022
2
13.0
2
100
0
52
50
0
0
50
1.00
119522--119549
1
28.0
1
100
0
56
0
0
0
100
0.00
134181--134217
7
5.3
7
93
0
56
2
8
0
89
0.58
134184--134225
9
4.6
9
85
11
50
4
4
0
90
0.55
134183--134226
14
3.0
15
87
9
56
6
6
0
86
0.71
134815--134856
22
1.9
22
100
0
84
28
35
21
14
1.92
137404--137449
24
1.9
24
95
0
83
41
23
28
6
1.79
137434--137693
106
2.5
106
94
0
459
33
21
20
23
1.97
138223--138539
119
2.7
118
85
6
418
32
27
23
16
1.96
141213--141251
5
8.2
5
88
11
64
61
0
0
38
0.96
144204--144250
24
2.0
24
86
0
67
27
19
36
17
1.93
145892--145920
2
14.5
2
100
0
58
48
0
0
51
1.00
150449--150745
102
2.9
103
97
0
560
30
13
16
39
1.87
166384--166436
27
2.0
27
92
0
88
37
9
7
45
1.65
166431--166463
11
3.1
11
82
8
50
15
3
0
81
0.80
171939--171980
22
1.9
22
85
0
57
30
7
19
42
1.78
195483--195510
7
4.0
7
100
0
56
0
28
14
57
1.38
202080--202107
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203148--203184
3
12.3
3
100
0
74
0
32
0
67
0.91
205008--205049
20
2.0
20
90
4
66
26
19
21
33
1.97
215749--215826
39
2.0
39
89
0
120
33
19
11
35
1.88
218159--218286
64
2.0
64
96
0
238
25
17
18
39
1.92
218553--218581
13
2.2
13
100
0
58
27
20
17
34
1.95
220507--220543
2
19.0
2
94
5
67
51
0
0
48
1.00
230347--230381
2
18.0
2
94
5
63
48
0
0
51
1.00
230848--230873
10
2.6
10
100
0
52
38
23
7
30
1.83

Tables:   1

The End!