Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012827.1 Corchorus capsularis cultivar CVL-1 contig12848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80621

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4226--4257
2
16.5
2
93
6
57
53
0
0
46
1.00
7058--7082
12
2.1
12
100
0
50
40
0
0
60
0.97
8503--8537
2
17.5
2
100
0
70
51
0
0
48
1.00
13439--13555
59
2.0
58
93
1
198
32
37
11
18
1.86
15700--15732
2
16.5
2
100
0
66
51
0
0
48
1.00
16189--16272
32
2.6
32
98
0
159
16
44
27
11
1.83
21549--21592
22
2.0
22
100
0
88
27
9
31
31
1.88
34904--35173
132
2.0
133
93
0
461
28
11
24
36
1.90
36653--36687
2
18.0
2
94
5
63
51
0
0
48
1.00
44076--44154
41
1.9
41
97
0
149
34
13
15
36
1.87
44777--44807
16
1.9
16
93
0
53
54
0
38
6
1.26
48378--48418
22
1.9
21
85
5
55
34
17
12
36
1.87
52751--52782
16
2.0
16
100
0
64
12
18
31
37
1.88
53590--53943
181
2.0
178
92
1
591
26
12
13
47
1.78
55209--55298
33
2.7
33
96
0
162
16
35
28
18
1.93
55372--55481
32
3.4
33
86
6
127
12
39
36
11
1.80
65414--65438
13
1.9
13
100
0
50
4
24
0
72
1.02

Tables:   1

The End!