Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012828.1 Corchorus capsularis cultivar CVL-1 contig12849, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1959
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32


Found at i:1271 original size:23 final size:23

Alignment explanation


    Indices: 1241--1286  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1231 AGGTGTCGAC

                                   
       1241 ATAAATTAATTAGATACATGCTT
          1 ATAAATTAATTAGATACATGCTT

                            *      
       1264 ATAAATTAATTAGATAGATGCTT
          1 ATAAATTAATTAGATACATGCTT

       1287 CTAGCTAACT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39


Consensus pattern (23 bp):   
ATAAATTAATTAGATACATGCTT
Done.