Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001283.1 Corchorus capsularis cultivar CVL-1 contig01283, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8297
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:6587 original size:31 final size:31

Alignment explanation


    Indices: 6542--6614  Score: 119
    Period size: 31  Copynumber: 2.3  Consensus size: 31

       6532 CAAAATCAAC

                     *                      
       6542 ATAACAAACGCAAACACAAATTACAACCATAA
          1 ATAA-AAACACAAACACAAATTACAACCATAA

                                           
       6574 ATAAAAACACAAACACAAATTACAACCATAA
          1 ATAAAAACACAAACACAAATTACAACCATAA

                      
       6605 ATAAATAACA
          1 ATAAA-AACA

       6615 AAGCCTAAGG


Statistics
Matches: 39,  Mismatches: 1, Indels: 2
        0.93            0.02        0.05

Matches are distributed among these distances:
  31   31  0.79
  32    8  0.21

ACGTcount: A:0.63, C:0.22, G:0.01, T:0.14


Consensus pattern (31 bp):   
ATAAAAACACAAACACAAATTACAACCATAA
Done.