Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012834.1 Corchorus capsularis cultivar CVL-1 contig12855, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7103
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:1796 original size:3 final size:3

Alignment explanation


    Indices: 1788--1819  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       1778 GAAACGGAAC

                                                      
       1788 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA

       1820 AGAATAATCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (3 bp):   
AAT

Found at i:4344 original size:2 final size:2

Alignment explanation


    Indices: 4339--4371  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       4329 CTTTATAGAG

                                                             
       4339 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4372 ATAGATGATT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.