Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012835.1 Corchorus capsularis cultivar CVL-1 contig12856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54981

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2232--2349
61
1.9
61
91
0
191
34
27
18
19
1.95
5586--5614
3
9.7
3
100
0
58
34
34
31
0
1.58
10965--11162
62
3.1
62
62
22
138
49
23
5
21
1.70
10939--11197
129
2.0
129
96
0
482
47
23
6
22
1.74
11419--11448
2
15.0
2
100
0
60
50
0
0
50
1.00
12155--12186
15
2.1
15
94
0
55
46
9
25
18
1.79
19086--19145
25
2.5
24
84
10
79
43
6
8
41
1.61
19100--19150
25
2.0
25
100
0
102
45
7
7
39
1.62
21850--21877
1
28.0
1
100
0
56
0
100
0
0
0.00
24569--24695
66
2.0
63
86
7
175
32
12
21
33
1.91
25833--25867
16
2.1
18
89
10
56
60
11
20
8
1.57
27866--30025
333
6.5
328
75
8
1203
33
14
14
37
1.87
27866--30066
337
6.6
331
76
8
1555
33
14
15
37
1.87
29448--30673
609
2.0
606
89
3
1861
32
14
17
35
1.89
30061--32282
321
7.0
319
77
8
1877
33
13
16
36
1.88
31877--34757
829
3.5
826
92
2
4659
33
12
16
37
1.87
36099--38922
334
8.5
331
79
8
2724
33
14
16
36
1.89
38985--41616
334
8.0
331
81
7
2883
33
14
16
35
1.89
44779--45243
138
3.4
138
93
1
720
32
20
18
28
1.96
50685--50709
11
2.3
11
100
0
50
0
8
0
92
0.40
50670--50710
14
2.7
15
88
11
66
2
12
0
85
0.70
50824--50898
16
4.7
16
74
21
59
30
40
20
9
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50824--50898
32
2.3
32
90
0
114
30
40
20
9
1.84
52604--52648
16
2.8
16
82
0
63
35
35
20
8
1.84
52754--52800
21
2.2
21
92
0
76
29
8
6
55
1.55
53246--53362
16
7.4
16
83
3
130
35
38
19
5
1.77
53246--53306
7
7.9
7
76
20
59
31
39
24
4
1.77
53246--53365
9
15.1
8
71
22
76
36
37
20
5
1.76
54210--54442
22
10.6
23
73
12
109
41
9
14
34
1.78
54244--54353
45
2.4
46
79
8
116
39
10
14
36
1.80
54193--54417
22
10.3
22
70
10
113
40
10
14
34
1.80
54689--54760
24
3.0
24
82
7
85
40
5
15
38
1.70
54674--54751
24
3.4
23
76
11
70
43
5
12
38
1.65
54522--54980
22
21.0
22
68
8
179
38
8
16
36
1.80

Tables:   1

The End!