Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012838.1 Corchorus capsularis cultivar CVL-1 contig12859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153662

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8853--8877
7
3.6
7
100
0
50
48
36
0
16
1.46
17331--17469
67
2.1
67
100
0
278
41
15
21
20
1.90
28615--28640
2
13.0
2
100
0
52
50
0
0
50
1.00
28882--28922
9
4.3
9
82
11
55
46
2
0
51
1.14
76593--76623
5
6.2
5
92
0
53
22
0
19
58
1.40
81305--81334
15
2.0
15
100
0
60
33
20
6
40
1.78
88342--88384
15
2.7
15
78
7
50
2
2
27
67
1.15
89160--89201
22
1.9
22
90
0
66
47
4
0
47
1.23
89956--89985
2
15.0
2
100
0
60
50
0
0
50
1.00
90506--90558
25
2.3
22
80
9
61
60
5
13
20
1.53
92368--92560
99
1.9
102
86
3
275
29
23
23
22
1.99
92718--92971
126
2.0
126
96
0
472
28
13
29
28
1.94
93770--93802
2
16.5
2
100
0
66
51
0
0
48
1.00
94623--94649
3
9.0
3
100
0
54
33
33
33
0
1.58
97266--97332
30
2.2
30
81
7
82
40
29
5
23
1.79
109603--109632
1
30.0
1
100
0
60
0
0
0
100
0.00
117626--117654
1
29.0
1
100
0
58
100
0
0
0
0.00
127637--127671
3
11.7
3
100
0
70
0
31
0
68
0.90
129844--129874
15
2.0
16
93
6
55
12
9
19
58
1.62
152311--152375
31
2.1
31
91
0
103
23
16
21
38
1.93

Tables:   1

The End!