Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012839.1 Corchorus capsularis cultivar CVL-1 contig12860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35449

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1608--2050
167
2.7
166
86
1
600
39
15
14
30
1.88
2614--2702
45
2.0
45
90
0
142
26
20
17
34
1.95
3039--3088
17
2.8
17
82
14
57
26
2
22
50
1.60
3463--3511
25
2.0
25
84
4
64
38
0
28
32
1.57
4943--4970
2
14.0
2
100
0
56
50
0
0
50
1.00
5713--5814
47
2.2
47
90
0
159
9
12
22
54
1.67
5832--5907
29
2.6
29
78
15
86
17
6
17
59
1.58
7121--7306
86
2.1
87
86
6
270
53
1
9
36
1.43
6839--7281
145
3.0
151
66
18
364
52
3
9
34
1.49
7155--7330
86
2.1
87
81
5
207
52
0
10
35
1.41
7457--7484
6
4.7
6
100
0
56
35
0
32
32
1.58
8910--8946
2
18.5
2
100
0
74
51
0
0
48
1.00
11644--11794
74
2.0
74
86
5
207
32
19
17
30
1.95
14110--14177
35
1.9
35
96
0
127
27
22
5
44
1.76
15817--15977
84
1.9
84
91
2
263
36
11
1
51
1.46
16087--16154
35
1.9
35
93
0
118
32
5
2
58
1.37
21512--21857
156
2.2
154
80
6
358
30
15
20
33
1.93
26914--26940
4
6.8
4
100
0
54
25
22
0
51
1.48
27761--31104
331
10.2
329
75
10
2584
33
14
15
36
1.88
27796--30397
649
4.0
648
77
8
1686
33
14
14
36
1.88
27789--30658
981
2.9
975
78
8
2511
33
14
14
36
1.87
32423--35448
331
9.2
330
77
7
2516
32
14
15
37
1.88

Tables:   1

The End!