Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012840.1 Corchorus capsularis cultivar CVL-1 contig12861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97568

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2035--7586
331
16.8
327
75
10
4051
32
13
15
38
1.87
3732--3766
16
2.2
16
100
0
70
28
5
22
42
1.76
7824--7853
13
2.4
12
89
10
51
53
40
6
0
1.27
7909--7933
13
1.9
13
100
0
50
80
8
4
8
1.03
8572--10499
988
2.0
979
81
5
2254
33
14
15
37
1.87
11226--11622
217
1.8
216
82
5
507
35
11
14
38
1.82
11443--12627
335
3.6
331
81
6
1242
34
13
14
37
1.86
19862--19908
6
7.8
6
95
0
85
31
48
0
19
1.49
27278--27302
13
1.9
13
100
0
50
16
12
8
64
1.49
36342--36366
1
25.0
1
100
0
50
100
0
0
0
0.00
37505--37550
23
2.0
22
84
12
58
69
6
4
19
1.28
45157--45192
3
12.0
3
100
0
72
33
0
0
66
0.92
52042--52150
2
61.0
2
70
21
55
55
1
0
43
1.10
52063--52149
34
2.4
37
79
12
101
57
1
0
41
1.06
52097--52154
18
3.2
18
76
11
64
53
0
0
46
1.00
52096--52154
20
3.1
20
74
18
63
54
0
0
45
0.99
52876--52913
11
3.5
11
89
10
51
39
0
2
57
1.12
63050--63825
259
3.0
259
97
0
1480
18
32
7
41
1.79
64761--64830
30
2.3
31
87
5
97
47
4
17
31
1.67
70230--70267
11
3.4
11
88
3
58
86
0
13
0
0.56
70238--70267
15
2.1
14
93
6
51
90
0
10
0
0.47
82709--82734
13
2.0
13
100
0
52
0
0
92
7
0.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87126--87211
43
2.0
43
90
6
138
25
16
5
52
1.66

Tables:   1

The End!