Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012841.1 Corchorus capsularis cultivar CVL-1 contig12862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38107

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
455--496
22
2.0
21
90
4
66
2
11
4
80
0.95
457--503
13
3.7
13
77
13
53
2
14
2
80
0.89
1032--1065
14
2.3
15
90
5
52
35
44
0
20
1.52
1057--1116
25
2.5
25
91
5
97
35
25
0
40
1.56
6624--6659
11
3.3
11
100
0
72
16
0
36
47
1.47
11495--11576
42
1.9
43
90
2
130
29
18
15
36
1.92
11663--11706
22
2.0
22
100
0
88
27
13
22
36
1.92
20471--20495
13
1.9
13
100
0
50
56
0
0
44
0.99
29178--29229
16
3.2
16
75
20
54
63
15
0
21
1.31
31299--31323
7
3.6
7
100
0
50
0
28
16
56
1.41
33047--33182
60
2.3
60
85
0
200
36
16
17
28
1.92
33271--33388
60
2.0
60
86
0
164
33
19
15
32
1.93
34605--34648
21
2.1
21
82
0
52
22
25
11
40
1.87
34728--34798
32
2.2
32
89
0
106
11
40
33
14
1.81
34816--34859
19
2.4
18
79
20
56
56
4
0
38
1.20
34817--34862
20
2.5
18
82
10
58
58
2
0
39
1.10
35669--35705
18
2.1
18
94
0
65
48
0
24
27
1.51
37651--37680
13
2.2
14
94
5
53
16
0
10
73
1.09

Tables:   1

The End!