genome.fa.s12844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012844.1 Corchorus capsularis cultivar CVL-1 contig12865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25257

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372--1400	2	14.5	2	100	0	58	51	0	0	48	1.00
1521--2037	22	23.7	21	67	15	153	37	14	9	38	1.79
1651--1715	23	2.9	22	79	4	67	40	15	12	32	1.84
2027--2075	19	2.5	20	83	3	73	26	20	10	42	1.84
2271--2309	21	2.0	19	85	14	53	41	7	5	46	1.55
2181--2499	22	14.3	22	67	18	101	36	15	9	39	1.79
2617--2694	22	3.5	22	91	0	129	34	14	12	38	1.84
2563--2701	22	6.2	22	78	9	111	38	17	9	33	1.82
4270--4354	23	3.7	23	80	1	91	38	14	5	41	1.70
4087--4530	22	20.3	22	68	13	114	37	15	9	37	1.79
4249--4478	22	10.6	21	72	14	121	34	14	9	41	1.78
4513--4562	19	2.5	20	83	6	75	26	18	14	42	1.87
4668--4914	22	11.3	22	71	10	159	34	13	9	42	1.77
4644--4837	44	4.4	44	75	16	163	35	11	9	43	1.74
4668--4880	66	3.2	66	79	8	202	35	12	9	42	1.76
4643--4809	88	1.9	88	86	4	239	34	12	10	43	1.76
4802--4840	21	2.0	19	85	14	53	41	7	5	46	1.55
4668--4974	22	13.8	22	69	18	122	35	14	9	41	1.78
5094--5230	22	6.1	22	80	9	125	40	18	9	32	1.83
5101--5255	44	3.5	42	76	11	123	40	18	9	32	1.83
5148--5245	22	4.5	22	84	5	83	35	17	12	34	1.87
5546--5610	30	2.1	31	86	8	89	50	3	18	27	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14834--22775	319	24.4	320	76	9	6000	36	16	13	33	1.88
22832--22877	21	2.2	20	88	3	65	17	19	34	28	1.94
24828--25070	122	2.0	121	79	9	262	53	3	8	34	1.49
25113--25149	13	2.8	14	84	16	60	48	0	0	51	1.00
25114--25149	15	2.4	15	95	0	63	50	0	0	50	1.00
25114--25149	2	19.0	2	88	11	58	50	0	0	50	1.00

Tables:   1

The End!