Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012846.1 Corchorus capsularis cultivar CVL-1 contig12867, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48273

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16550--16607
29
2.0
29
93
0
98
44
8
25
20
1.80
16956--17028
27
2.6
28
82
6
85
32
6
13
46
1.70
16968--17049
26
3.1
27
77
10
71
35
8
14
41
1.77
22066--22326
105
2.5
105
88
8
397
42
9
8
39
1.67
28395--28435
3
13.7
3
100
0
82
68
0
0
31
0.90
35328--35392
32
2.0
32
100
0
130
24
12
23
40
1.89
35330--35385
19
3.3
19
67
27
61
26
10
21
41
1.86
43582--43625
2
22.0
2
86
9
63
50
4
0
45
1.22
43654--43717
30
2.1
31
88
2
94
26
17
4
51
1.64
43740--43779
18
2.3
18
86
4
55
32
5
0
62
1.17
43808--43945
22
6.2
22
79
11
111
33
9
19
37
1.84
44048--44114
19
3.5
19
87
2
89
44
10
19
25
1.82
44105--44596
22
22.5
22
68
13
162
39
8
14
38
1.76
44105--44397
44
6.8
43
73
12
181
41
8
13
36
1.75
44296--44397
23
4.5
23
80
3
82
39
6
13
40
1.72
45568--45629
31
2.0
31
90
0
97
46
6
17
29
1.73

Tables:   1

The End!