Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012847.1 Corchorus capsularis cultivar CVL-1 contig12868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54099

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
786--825
11
3.6
11
79
0
53
17
30
27
25
1.97
792--834
22
2.0
22
95
0
77
20
25
23
30
1.99
5182--5211
14
2.1
14
100
0
60
36
13
0
50
1.42
7822--7852
2
15.5
2
100
0
62
48
0
0
51
1.00
13117--13141
12
2.1
12
100
0
50
40
8
20
32
1.81
17439--17544
38
2.8
38
97
2
198
46
15
4
33
1.66
20306--20341
14
2.5
15
86
9
56
69
0
2
27
1.02
27116--27196
24
3.4
24
81
13
87
18
41
22
17
1.90
29383--29432
18
2.9
18
79
5
59
14
28
18
40
1.89
30155--30253
31
3.2
31
88
0
135
19
21
26
33
1.97
30225--30272
22
2.3
20
86
10
62
18
14
25
41
1.88
30205--30305
53
1.9
53
83
0
130
19
17
23
38
1.93
32446--32470
5
5.0
5
100
0
50
20
40
20
20
1.92
34064--34094
16
1.9
16
93
0
53
61
0
0
38
0.96
36370--36399
4
7.5
4
100
0
60
0
23
0
76
0.78
38782--38823
17
2.5
17
88
7
59
21
19
23
35
1.96
42969--43006
11
3.5
11
85
10
51
57
2
0
39
1.12
53233--53258
2
13.0
2
100
0
52
50
0
0
50
1.00
53531--53574
3
15.0
3
95
4
81
31
0
0
68
0.90

Tables:   1

The End!