genome.fa.s12852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012852.1 Corchorus capsularis cultivar CVL-1 contig12873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87955

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7568--7607	21	1.9	21	89	0	62	5	0	10	85	0.75
7563--7612	25	2.1	24	85	7	66	4	0	16	80	0.87
27785--27864	39	2.0	40	83	11	103	28	20	15	36	1.92
29695--29760	31	2.1	31	86	5	89	48	3	16	31	1.62
30752--30785	15	2.3	15	94	0	59	29	14	17	38	1.90
33480--33558	27	2.9	27	92	0	131	41	6	11	40	1.66
43064--43116	24	2.2	24	89	0	79	39	9	15	35	1.79
53403--53435	6	5.5	6	89	10	50	3	12	0	84	0.72
56081--56118	15	2.6	15	88	12	53	55	5	0	39	1.23
57317--57346	15	1.9	15	93	6	51	60	0	0	40	0.97
62144--62202	28	2.1	29	81	9	68	27	5	22	45	1.73
63149--63422	109	2.5	109	91	5	419	48	1	11	37	1.50
77380--77410	6	5.2	6	92	0	53	19	51	29	0	1.47
77493--77570	24	3.3	23	74	12	68	25	60	6	7	1.48
77518--77569	18	2.9	18	76	0	59	26	61	5	5	1.42
77498--77648	79	1.9	78	81	5	171	25	58	5	9	1.50
77714--78141	3	142.3	3	67	8	82	25	59	4	10	1.51
77704--77885	24	8.1	24	68	16	102	24	59	3	11	1.48
77808--78378	78	7.5	78	69	13	257	24	58	4	12	1.53
77900--78147	24	10.2	24	72	10	128	25	58	5	10	1.53
77683--78390	15	47.5	15	64	11	143	24	58	4	12	1.52
78045--78264	42	5.2	41	66	12	106	21	58	4	15	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78239--78366	24	5.2	24	64	17	66	24	60	3	11	1.45
78300--78363	21	2.9	21	71	13	56	18	64	1	15	1.38
78350--78397	12	4.0	12	80	0	60	29	58	4	8	1.46
78353--78402	24	2.1	24	92	0	82	28	58	4	10	1.49
78359--78441	42	2.0	42	87	0	121	25	59	4	10	1.51
78213--78420	99	2.1	99	97	0	389	23	60	2	13	1.46
78389--78513	66	1.9	66	81	3	153	24	57	5	12	1.57
78422--78533	42	2.7	41	76	15	129	25	57	4	12	1.54
78572--78618	24	2.0	24	86	0	67	25	61	4	8	1.43
78579--78642	30	2.1	30	88	0	92	26	59	3	10	1.46
78572--78699	54	2.4	53	78	10	136	23	58	5	12	1.55
78615--78702	18	4.9	18	70	5	61	21	57	5	14	1.58
78683--78725	15	2.9	15	82	0	50	23	65	0	11	1.25
78685--78736	21	2.5	22	84	6	63	21	59	1	17	1.47
78687--78765	30	2.6	30	75	0	77	22	60	3	12	1.48
83559--83611	21	2.5	21	81	3	61	5	3	45	45	1.45

Tables:   1

The End!