genome.fa.s12853.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012853.1 Corchorus capsularis cultivar CVL-1 contig12874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110095

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7942--7966	1	25.0	1	100	0	50	0	0	0	100	0.00
15271--16270	396	2.5	395	85	6	1316	34	17	13	34	1.89
15274--16270	197	5.1	199	85	3	1263	34	17	13	34	1.89
17871--17895	13	1.9	13	100	0	50	84	0	16	0	0.63
18959--18994	2	18.5	2	88	5	56	52	0	0	47	1.00
18959--19000	10	4.2	10	87	6	50	54	0	0	45	0.99
20016--20054	21	1.9	20	94	5	69	51	2	0	46	1.14
20156--20189	6	5.3	6	86	13	50	64	0	0	35	0.94
20146--20183	14	2.5	15	91	8	60	60	0	0	39	0.97
21098--22736	199	8.3	199	83	6	1976	34	17	13	34	1.89
21543--22736	197	6.0	199	83	6	1414	34	17	13	34	1.89
21098--22736	581	2.8	595	84	5	1789	34	17	13	34	1.89
24427--24470	2	24.0	2	78	17	51	50	0	0	50	1.00
33066--33095	15	2.0	15	93	0	51	40	6	10	43	1.64
48588--48621	7	4.9	7	96	0	59	91	8	0	0	0.43
49265--49308	17	2.7	16	82	13	54	0	25	0	75	0.81
52184--52216	13	2.6	13	90	4	50	0	15	0	84	0.61
55574--55688	61	1.9	61	92	0	194	27	20	22	28	1.99
58207--58283	19	4.3	19	67	18	65	33	10	6	49	1.63
67825--67880	3	18.3	3	85	10	78	3	30	1	64	1.21
70487--70638	74	2.1	74	90	5	236	21	27	9	42	1.83
74384--74658	109	2.5	109	92	5	439	38	11	1	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86127--86174	24	2.0	24	100	0	96	33	20	8	37	1.83
86364--86424	28	2.1	29	84	3	79	32	6	1	59	1.33
99769--99822	28	1.9	28	96	0	99	33	20	5	40	1.76
109836--109880	22	2.2	20	88	8	63	42	13	6	37	1.70

Tables:   1

The End!