genome.fa.s12854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012854.1 Corchorus capsularis cultivar CVL-1 contig12875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130782

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916--1231	64	5.0	64	78	5	300	31	15	23	29	1.96
918--1215	123	2.3	126	81	5	325	31	15	23	29	1.95
1556--1879	168	1.9	168	93	0	558	24	12	21	40	1.89
2825--3014	67	2.9	65	82	4	213	31	15	22	31	1.94
2827--3014	64	2.9	66	82	4	211	31	15	22	30	1.95
2980--3048	34	2.0	34	88	0	102	33	14	24	27	1.94
2930--3114	101	1.9	98	84	5	246	31	15	22	30	1.94
2849--3179	165	2.0	165	100	0	662	32	14	22	30	1.94
3014--3301	64	4.5	64	80	7	309	30	15	22	31	1.95
3056--3302	123	2.0	124	85	0	334	29	16	22	31	1.95
3370--3717	177	2.0	177	91	1	572	23	13	21	41	1.89
5940--6429	247	2.0	242	93	2	845	24	16	18	39	1.91
8866--8927	27	2.3	27	76	13	65	22	14	11	51	1.74
11406--11558	67	2.3	64	85	3	207	29	17	22	30	1.97
11567--11720	64	2.5	61	82	9	172	28	16	21	33	1.95
14064--14125	30	2.1	30	100	0	124	30	16	9	43	1.80
20584--20648	32	2.0	32	100	0	130	33	6	35	24	1.80
30644--30690	3	15.7	3	100	0	94	0	31	0	68	0.90
48774--48866	48	2.0	47	95	2	168	30	8	11	49	1.69
49542--49579	3	12.7	3	100	0	76	34	0	0	65	0.93
49921--49966	24	1.9	24	100	0	92	39	10	17	32	1.84
53519--53554	6	6.0	6	86	0	54	0	55	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59561--59595	5	7.0	5	90	9	54	0	17	0	82	0.66
73404--73454	26	2.0	26	88	3	77	33	1	19	45	1.62
76413--76442	15	1.9	16	93	6	53	43	6	0	50	1.28
78058--78090	17	2.0	17	94	5	59	27	12	18	42	1.85
84651--87176	52	48.1	52	85	7	3141	29	14	23	33	1.94
84651--86639	27	76.0	26	86	7	2552	29	14	23	32	1.94
86640--87176	26	20.5	26	84	3	654	28	14	22	34	1.93
87169--87244	35	2.2	33	80	11	82	23	13	21	42	1.88
88165--90113	334	5.8	333	81	4	1960	32	15	15	36	1.89
88293--90118	670	2.7	668	83	3	2153	32	16	14	36	1.89
89577--90644	531	2.0	539	82	4	1286	30	17	14	36	1.90
90119--92695	335	7.7	334	90	2	3814	31	16	15	36	1.90
92555--92834	142	2.0	142	86	0	398	37	16	11	33	1.85
92697--95875	333	9.6	331	84	4	3695	32	15	15	36	1.89
95327--96500	618	1.9	620	83	4	1542	32	15	14	38	1.87
95945--96878	330	2.9	322	82	9	1037	32	15	14	38	1.87
98392--98579	56	3.5	55	86	10	269	32	25	32	9	1.88
98403--98557	51	2.9	51	88	8	222	29	25	34	10	1.89
102408--102450	20	2.4	17	75	20	50	20	11	11	55	1.66
103347--103388	11	3.8	11	87	12	68	45	4	2	47	1.36
103347--103393	22	2.1	22	100	0	94	44	4	4	46	1.42
108783--109042	134	1.9	134	83	4	337	43	16	8	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116565--116591	11	2.5	11	100	0	54	29	11	11	48	1.73
121335--121363	2	14.5	2	100	0	58	51	0	0	48	1.00
122802--122862	21	2.9	21	73	16	54	45	9	4	39	1.59
125817--125842	13	2.0	13	100	0	52	53	46	0	0	1.00
126011--126072	29	2.1	29	82	5	72	35	9	12	41	1.76

Tables:   1

The End!