Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012863.1 Corchorus capsularis cultivar CVL-1 contig12884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86419

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98--141
21
2.2
20
83
4
52
56
4
6
31
1.46
817--1468
343
1.9
331
82
7
801
38
13
9
38
1.77
1979--2018
3
13.3
3
100
0
80
32
0
0
67
0.91
6628--6808
93
1.9
93
88
0
272
40
11
22
25
1.88
13410--13443
6
5.7
6
85
0
50
79
0
17
2
0.86
13412--13447
18
2.0
18
100
0
72
72
0
22
5
1.05
25039--25069
2
15.5
2
100
0
62
0
51
0
48
1.00
34481--34512
2
16.0
2
100
0
64
50
0
0
50
1.00
35999--36045
22
2.1
23
88
4
69
57
8
2
31
1.41
36010--36059
22
2.3
22
82
6
57
60
6
2
32
1.32
36023--36061
15
2.6
15
83
0
51
56
5
2
35
1.35
39637--39665
14
2.0
15
93
6
51
17
0
27
55
1.42
40983--41158
91
1.9
91
87
0
253
38
20
11
29
1.87
46622--46660
18
2.2
18
85
0
51
38
2
20
38
1.66
47028--47103
39
1.9
39
83
0
98
48
23
21
6
1.73
52115--52381
54
5.2
51
78
14
275
42
16
20
21
1.89
52179--52267
45
2.0
45
88
4
135
35
19
20
24
1.95
52327--52421
45
2.1
45
96
0
172
42
15
18
23
1.89
57009--57033
2
12.5
2
100
0
50
0
0
48
52
1.00

Tables:   1

The End!