Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012865.1 Corchorus capsularis cultivar CVL-1 contig12886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93132

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2898--2959
3
20.7
3
93
0
106
35
0
1
62
1.05
8023--8124
34
3.0
34
88
1
150
11
10
24
52
1.69
8463--8525
33
1.9
33
96
0
117
17
28
36
17
1.93
14335--14369
17
2.1
17
94
0
61
40
5
14
40
1.69
26165--26202
11
3.5
11
85
10
51
57
2
0
39
1.12
26623--26854
125
1.9
125
91
0
383
38
13
14
33
1.85
32710--32841
66
2.0
66
92
2
221
26
9
29
34
1.87
32722--32860
66
2.1
66
80
5
147
30
9
29
30
1.88
44024--44404
188
2.0
188
98
0
744
36
15
11
36
1.83
46611--46636
1
26.0
1
100
0
52
0
0
0
100
0.00
57108--57145
2
19.0
2
94
0
67
2
50
0
47
1.15
89474--92340
653
4.4
649
86
4
3479
33
14
15
35
1.89
91895--92790
451
2.0
448
92
1
1492
32
15
15
35
1.90

Tables:   1

The End!