Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012866.1 Corchorus capsularis cultivar CVL-1 contig12887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9655

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108--169
11
4.7
14
69
27
55
32
1
9
56
1.41
108--175
26
2.6
26
86
9
102
33
1
10
54
1.43
184--251
25
2.9
24
78
8
77
41
1
23
33
1.64
314--357
21
2.1
21
86
0
61
36
9
38
15
1.80
6664--6694
15
2.1
15
93
0
53
0
22
35
41
1.54
7874--8141
107
2.5
110
90
4
420
41
8
8
40
1.68
8165--8195
1
31.0
1
93
0
53
96
0
0
3
0.21
8153--8194
12
3.2
13
90
10
59
90
2
2
4
0.60
9241--9408
42
4.0
42
96
1
293
37
11
20
30
1.88
9455--9564
34
3.3
33
81
8
125
17
34
31
16
1.92
9477--9564
33
2.6
34
83
1
106
15
37
29
17
1.91

Tables:   1

The End!