Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012868.1 Corchorus capsularis cultivar CVL-1 contig12889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90373

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--25
2
12.5
2
100
0
50
48
0
0
52
1.00
3339--3374
18
2.0
18
88
0
54
25
41
8
25
1.83
8977--9029
7
7.6
7
97
0
97
28
28
16
26
1.97
10999--11437
218
2.0
218
99
0
869
34
19
17
27
1.95
18670--18703
11
3.0
11
91
4
50
76
2
20
0
0.92
62569--62604
13
3.0
12
88
11
56
50
19
5
25
1.69
64507--64581
30
2.6
29
77
12
82
32
17
24
26
1.97
65614--65650
19
1.9
19
94
0
65
51
13
2
32
1.55
66052--66138
41
2.0
42
91
8
140
40
18
13
27
1.88
69387--69429
3
13.3
3
86
13
59
39
0
0
60
0.97
69384--69433
10
4.7
10
77
22
57
40
0
0
60
0.97
69384--69426
7
6.4
7
94
5
72
39
0
0
60
0.97
73130--73156
7
3.9
7
100
0
54
14
29
25
29
1.95
75205--75302
15
6.5
15
93
0
169
14
15
53
17
1.74
75190--75302
30
3.7
30
92
3
181
15
15
52
17
1.75
75190--75303
45
2.5
45
89
4
174
14
15
51
17
1.76
75190--75272
21
4.0
21
68
23
59
15
14
51
18
1.76
75190--75303
15
7.4
15
90
3
156
14
15
51
17
1.76
84599--87075
329
7.6
328
75
10
1987
33
13
16
36
1.88
84502--87064
980
2.6
957
77
9
2516
33
13
16
36
1.88
86992--87277
146
2.0
146
83
4
371
35
10
15
38
1.82
87138--88561
656
2.2
648
83
5
1723
32
13
16
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89228--90066
324
2.6
321
79
8
795
33
13
17
35
1.89

Tables:   1

The End!