Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012872.1 Corchorus capsularis cultivar CVL-1 contig12893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27075

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--40
2
20.0
2
100
0
80
50
0
0
50
1.00
2486--2543
25
2.4
23
85
5
71
32
22
1
43
1.64
2563--2611
11
4.1
11
76
19
53
55
8
2
34
1.41
2553--2620
26
2.6
25
90
4
100
54
8
1
35
1.41
10060--10100
19
2.2
19
86
4
66
60
2
0
36
1.10
11850--11875
2
13.0
2
100
0
52
50
0
0
50
1.00
16814--16915
22
4.8
22
71
22
67
35
13
7
43
1.73
16817--16961
62
2.3
62
95
0
254
33
14
8
43
1.77
16995--17021
2
13.5
2
100
0
54
48
0
0
51
1.00
17033--17193
22
7.3
22
69
9
94
39
17
10
32
1.84
17201--17247
22
2.1
22
92
0
76
40
12
8
38
1.74
17261--17384
22
5.9
22
69
12
98
33
17
7
41
1.77
17374--17474
44
2.3
46
81
13
115
40
11
9
37
1.75
17581--17701
22
5.5
22
81
5
138
33
13
9
43
1.77
17556--17701
44
3.3
44
78
9
163
32
13
10
43
1.77
17759--17854
38
2.6
37
80
9
122
57
13
17
11
1.65
17963--18020
29
2.0
29
90
3
91
46
1
15
36
1.56
17975--18032
29
1.9
29
89
6
89
46
3
17
32
1.65
19407--19496
45
2.0
45
84
4
119
26
21
18
33
1.96
22404--22470
29
2.3
29
84
0
80
37
26
11
23
1.90
23064--23095
16
2.0
16
93
0
55
56
21
6
15
1.62
23506--23551
3
15.7
3
86
4
67
34
4
0
60
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26264--26329
31
2.1
32
91
5
109
27
19
6
46
1.73
26456--26548
38
2.4
38
82
5
116
19
16
5
59
1.56
26600--27049
22
20.6
22
69
10
170
38
10
16
35
1.82

Tables:   1

The End!