Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012873.1 Corchorus capsularis cultivar CVL-1 contig12894, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84959

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3164--3241
41
1.9
41
89
0
120
41
28
11
19
1.86
9112--9146
3
12.0
3
93
6
63
34
0
0
65
0.93
24953--24983
13
2.4
13
100
0
62
54
0
0
45
0.99
35432--35474
2
21.5
2
95
0
77
51
2
0
46
1.13
37045--37079
17
2.1
17
94
0
61
14
22
14
48
1.79
63867--63902
17
2.1
17
89
0
54
33
13
13
38
1.85
65960--66002
21
2.0
21
82
13
52
20
20
0
58
1.40
65966--66008
21
2.2
20
84
16
54
16
23
0
60
1.35
66063--66288
118
1.9
118
87
2
330
35
18
10
34
1.86
68383--68426
21
2.1
21
91
0
70
18
40
11
29
1.85
69940--70180
121
2.0
121
99
0
473
29
20
20
29
1.98
72679--72727
21
2.3
21
85
0
62
28
28
32
10
1.90
73621--73679
25
2.4
25
91
5
95
35
23
0
40
1.55
73689--73760
26
2.8
26
89
2
110
52
11
2
33
1.51
82566--82604
12
3.2
12
85
0
60
28
33
7
30
1.85
83645--84956
329
4.0
329
74
10
903
33
14
15
36
1.87

Tables:   1

The End!