Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012875.1 Corchorus capsularis cultivar CVL-1 contig12896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44970

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1612--1667
14
3.9
15
86
11
64
44
3
0
51
1.18
1618--1656
13
3.1
12
85
10
51
46
0
0
53
1.00
1619--1667
2
25.0
2
84
15
59
46
4
0
48
1.20
2360--2407
3
16.0
3
91
8
80
64
0
0
35
0.94
8107--8193
45
1.9
46
86
6
124
36
17
18
27
1.93
11758--11789
2
16.5
2
93
6
57
53
0
0
46
1.00
31526--31551
13
2.0
13
100
0
52
15
7
15
61
1.55
34353--34437
43
2.0
42
90
2
134
21
11
24
42
1.86
34650--34747
47
2.1
47
94
1
171
21
16
17
44
1.86
36916--36987
37
1.9
37
94
0
126
51
13
19
15
1.76
37495--37998
279
1.8
277
82
6
660
29
17
15
37
1.91
38090--38685
296
2.0
294
85
1
820
32
15
16
34
1.91
38386--43279
334
14.8
330
78
7
4598
31
15
16
35
1.91
38386--43279
671
7.4
665
83
5
5382
31
15
16
35
1.91
43266--43299
13
2.5
13
85
4
50
79
2
8
8
1.03
43563--44970
671
2.1
662
85
6
1878
32
15
16
35
1.90

Tables:   1

The End!