Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012877.1 Corchorus capsularis cultivar CVL-1 contig12898, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29396

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1717
663
2.6
643
83
4
2019
31
15
17
35
1.91
469--1774
334
3.9
332
83
3
1620
31
15
16
36
1.90
1661--1884
110
2.0
111
82
4
274
31
10
17
40
1.83
1356--2215
441
1.9
443
87
1
1271
32
14
16
36
1.89
2902--6554
334
11.0
331
77
9
3350
33
15
16
35
1.90
11803--11849
21
2.2
21
92
0
76
27
14
21
36
1.93
13206--13232
2
13.5
2
100
0
54
51
0
0
48
1.00
16781--16816
16
2.2
16
95
0
63
58
0
41
0
0.98
17507--17602
49
2.0
49
91
0
156
32
23
10
33
1.89
19578--19680
53
1.9
53
96
0
188
41
9
7
40
1.67
26510--27003
22
22.7
22
68
14
163
37
14
9
38
1.80
26730--26814
23
3.7
23
80
1
91
38
14
5
41
1.70
26758--26875
60
2.0
61
81
5
141
35
13
7
43
1.73
26975--27041
19
3.5
19
87
2
98
23
19
11
44
1.84
27159--27354
22
9.0
22
72
16
117
34
13
8
43
1.74
27126--27320
44
4.4
43
73
15
123
36
11
8
43
1.72
27245--27453
114
1.8
116
79
11
250
34
13
9
41
1.78
27377--27472
22
4.4
22
73
10
72
39
15
9
35
1.80
27585--27691
22
4.9
22
88
2
153
34
15
14
35
1.88
27585--27704
44
2.7
44
85
10
156
33
16
14
35
1.89
27567--27732
22
7.5
22
79
9
115
35
15
12
36
1.85
27565--27729
66
2.5
65
79
9
174
35
15
12
36
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28010--28068
30
2.0
29
87
9
84
50
3
11
33
1.56
28022--28091
30
2.3
31
90
5
106
51
4
14
30
1.61

Tables:   1

The End!