genome.fa.s12880.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012880.1 Corchorus capsularis cultivar CVL-1 contig12901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96090

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5894--5952	30	2.0	30	83	6	75	57	10	8	23	1.59
20665--20829	88	1.9	88	94	0	294	34	20	12	33	1.89
32152--32245	34	2.8	34	88	4	136	25	12	24	37	1.91
32219--32593	26	14.2	26	69	18	231	26	12	25	36	1.91
32220--35296	52	55.6	51	72	19	1459	25	13	25	35	1.92
32420--32749	26	11.7	31	71	22	139	26	12	25	34	1.92
32386--32526	60	2.4	60	97	1	266	26	14	24	35	1.93
32599--33461	26	32.7	26	74	13	410	25	12	26	35	1.92
32796--35296	86	29.7	79	72	18	1183	25	13	25	35	1.92
33483--33538	26	2.2	26	90	3	87	25	10	26	37	1.88
33509--33778	34	8.2	34	69	20	180	25	15	22	35	1.94
33444--33662	101	2.2	101	94	0	375	25	15	22	36	1.94
33523--33603	41	2.0	41	85	4	110	27	17	17	38	1.92
33564--33733	60	2.8	59	87	4	225	26	14	23	35	1.93
33644--33699	26	2.2	26	90	3	87	25	10	26	37	1.88
33957--34061	25	4.2	25	78	9	106	26	8	25	39	1.85
34007--35330	60	22.5	60	70	21	468	25	13	24	36	1.92
34098--34165	12	5.3	12	73	13	55	20	10	26	42	1.84
34093--34155	14	4.8	14	73	13	62	19	11	28	41	1.85
34145--34805	34	20.9	34	70	20	329	26	14	23	36	1.93
33859--35354	26	51.7	30	73	19	556	25	13	24	36	1.92
34777--35296	112	4.8	109	74	13	432	25	12	26	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35178--35332	63	2.5	63	87	5	210	25	14	22	37	1.92
35204--35720	33	16.3	33	70	14	252	27	16	18	37	1.92
35489--35612	63	2.0	63	85	0	167	30	11	17	40	1.85
35996--36156	79	2.0	80	97	1	306	32	14	15	36	1.89
36451--39589	655	4.8	656	85	4	3911	35	15	15	33	1.89
36458--39583	988	3.2	979	87	4	4236	35	15	15	33	1.89
36451--39589	330	9.6	330	84	4	3825	35	15	15	33	1.89
39670--42304	331	7.9	331	87	3	3551	35	15	15	33	1.89
45773--46414	35	18.7	34	87	6	765	38	10	17	33	1.85
45876--46000	29	4.1	29	85	10	162	37	11	16	34	1.85
50150--50214	3	22.3	3	85	6	89	35	1	0	63	1.04
50435--50591	74	2.1	74	93	0	269	21	29	9	38	1.85
51899--51924	2	13.0	2	100	0	52	50	0	0	50	1.00
54727--54766	4	10.0	4	94	0	62	80	0	20	0	0.72
55166--55318	76	2.0	76	94	2	272	33	11	7	47	1.67
56365--56395	15	2.1	15	100	0	62	54	12	0	32	1.38
57253--57337	42	2.0	42	100	0	170	52	9	4	32	1.54
57264--57357	42	2.2	42	88	3	134	54	10	4	30	1.54
57524--57584	16	3.4	17	80	19	63	42	1	0	55	1.09
57539--57586	2	26.5	2	80	19	61	43	0	0	56	0.99
70474--70527	16	3.4	16	77	10	65	12	9	42	35	1.75
70476--70556	32	2.5	32	91	0	126	13	9	38	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70460--70539	16	5.1	15	70	10	52	17	11	36	35	1.86
70706--70795	16	5.6	16	77	2	63	4	8	37	48	1.55
71451--71494	17	2.6	17	96	0	79	22	18	20	38	1.93
72064--72092	2	14.5	2	100	0	58	48	0	0	51	1.00
89054--89108	6	9.3	6	98	2	103	50	14	0	34	1.43
92020--92051	16	2.0	16	93	0	55	53	18	6	21	1.67
94850--94897	18	2.7	18	90	0	69	18	8	8	64	1.46
95196--95226	6	5.3	6	96	3	55	51	12	0	35	1.40

Tables:   1

The End!