Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012882.1 Corchorus capsularis cultivar CVL-1 contig12903, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3356
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:3143 original size:21 final size:21

Alignment explanation


    Indices: 3099--3144  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       3089 CCAGGGCACA

                         *     * 
       3099 TGGGTGCCCAGGCCAACCGGC
          1 TGGGTGCCCAGGCAAACCGCC

                   *        *    
       3120 TGGGTGCGCAGGCAAAGCGCC
          1 TGGGTGCCCAGGCAAACCGCC

                
       3141 TGGG
          1 TGGG

       3145 CGCACAGCCA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.15, C:0.30, G:0.43, T:0.11


Consensus pattern (21 bp):   
TGGGTGCCCAGGCAAACCGCC
Done.