Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012883.1 Corchorus capsularis cultivar CVL-1 contig12904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42354

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1364--1412
21
2.3
21
82
6
55
16
28
14
40
1.87
2495--2570
29
2.7
29
71
20
79
69
3
10
15
1.31
3109--3175
24
2.9
23
78
12
91
38
16
10
34
1.83
3108--3183
24
3.2
23
76
12
82
39
17
9
34
1.81
3176--3221
23
2.0
23
83
8
58
45
10
8
34
1.70
3602--3637
19
1.9
18
88
5
54
41
2
22
33
1.68
4301--4360
29
2.1
29
90
6
95
30
3
23
43
1.70
10069--10107
20
1.9
21
89
5
62
28
2
2
66
1.18
10069--10109
21
2.0
21
85
9
57
29
2
2
65
1.18
10221--10299
29
2.7
29
82
4
95
29
18
17
34
1.95
14689--14776
42
2.1
42
89
0
131
27
31
29
11
1.91
19763--19808
21
2.2
21
92
0
74
28
4
19
47
1.68
26272--26837
279
2.0
279
99
0
1123
32
10
17
40
1.83
29362--29395
11
3.2
11
91
4
52
17
0
5
76
0.98
30225--30284
21
2.9
21
74
0
66
35
13
21
30
1.92
33685--33713
13
2.1
14
93
6
51
58
0
41
0
0.98
36992--37044
18
3.0
17
91
5
79
43
16
22
16
1.88
38027--38229
70
3.0
69
94
4
353
35
12
10
41
1.78
41194--41247
26
2.1
26
100
0
108
53
0
12
33
1.39
42040--42082
11
3.9
11
90
0
68
46
6
4
41
1.51
42036--42082
22
2.1
22
96
0
85
46
6
4
42
1.48
42303--42338
11
3.3
11
92
7
56
47
5
2
44
1.41

Tables:   1

The End!