genome.fa.s12884.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012884.1 Corchorus capsularis cultivar CVL-1 contig12905, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77944

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5647--5715	31	2.3	31	89	2	104	50	13	15	20	1.77
6914--7054	31	4.6	31	80	4	135	39	14	14	31	1.86
7201--7267	29	2.2	31	89	5	102	22	16	13	47	1.81
7849--7915	32	2.1	33	94	2	118	43	13	16	26	1.85
7849--7959	32	3.5	31	78	14	100	41	12	18	27	1.86
7936--8022	44	2.0	44	100	0	174	34	5	25	34	1.80
8033--8058	2	13.0	2	100	0	52	50	0	0	50	1.00
17512--17623	36	3.2	35	78	16	126	27	17	6	48	1.71
17528--17633	32	3.2	32	77	17	117	28	16	5	49	1.69
17637--18021	36	10.7	36	85	2	470	24	20	9	45	1.81
17637--18021	108	3.6	108	88	2	560	24	20	9	45	1.81
18014--18272	11	23.5	11	73	5	146	24	18	8	47	1.77
18014--18274	22	11.8	22	77	3	193	25	18	8	47	1.77
18043--18274	11	21.0	11	73	6	182	26	18	8	46	1.78
18416--18550	42	3.3	42	89	5	206	25	20	10	42	1.84
18679--18708	15	2.1	14	93	6	51	16	26	10	46	1.78
22119--22165	24	2.0	23	84	12	60	12	17	6	63	1.48
30725--30851	49	2.6	48	80	8	150	30	17	5	46	1.71
31656--31705	15	3.3	15	77	0	55	44	14	24	18	1.86
33004--33143	33	4.2	32	78	7	111	10	26	41	21	1.86
52509--52640	49	2.8	48	83	4	169	28	18	5	48	1.69
56010--56069	22	2.7	22	86	2	84	40	8	5	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57070--57178	33	3.4	33	83	3	125	42	19	9	29	1.82
57201--57371	33	5.2	33	79	4	193	43	18	10	27	1.82
57209--57371	66	2.5	66	92	2	274	42	18	10	28	1.83
58754--58787	5	6.6	5	93	6	59	20	0	0	79	0.73
58861--58894	8	4.1	8	85	7	50	23	2	14	58	1.50
65533--65640	33	3.3	32	84	5	126	9	27	39	23	1.85
65726--66087	161	2.2	165	84	4	484	31	12	15	40	1.85
67596--67626	2	15.5	2	100	0	62	48	0	0	51	1.00
70284--70322	2	19.0	2	94	5	69	48	2	0	48	1.15
71947--71980	2	17.0	2	100	0	68	50	0	0	50	1.00
73161--73193	2	16.5	2	93	0	57	48	0	3	48	1.17
73193--73224	2	16.0	2	100	0	64	50	50	0	0	1.00
75213--75320	33	3.3	32	88	7	139	22	42	25	10	1.84
76564--76603	19	2.1	19	86	9	55	37	12	7	42	1.71

Tables:   1

The End!