Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012886.1 Corchorus capsularis cultivar CVL-1 contig12907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70824

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5912--5970
24
2.4
25
85
5
93
32
13
6
47
1.69
7788--7957
31
5.6
28
75
13
135
35
17
18
27
1.94
7785--7957
62
2.9
59
81
6
204
36
17
18
27
1.93
7987--8088
31
3.4
31
76
15
131
23
20
21
34
1.97
8015--8117
29
3.5
28
72
16
91
29
20
18
32
1.96
7987--8148
60
2.7
60
92
1
254
27
20
17
33
1.96
7987--8149
31
5.4
30
69
16
113
27
20
17
33
1.96
24260--24300
15
2.7
15
85
14
50
63
9
7
19
1.48
25422--25470
21
2.4
19
90
10
71
55
28
2
14
1.51
25422--25480
21
2.9
21
82
7
68
54
27
3
15
1.57
29153--29743
295
2.0
295
97
0
1110
27
20
19
32
1.97
35748--35774
12
2.2
12
100
0
54
0
11
0
88
0.50
37683--37722
14
3.0
14
89
7
57
20
42
22
15
1.88
37713--37777
30
2.2
30
88
5
96
21
36
27
13
1.92
45547--45615
28
2.5
26
80
13
75
14
10
24
50
1.73
48101--48140
15
2.7
15
80
11
55
57
0
42
0
0.98
54495--54558
17
3.9
16
78
10
67
12
12
40
34
1.81
54512--54618
32
3.3
32
88
0
151
14
11
38
36
1.81
55757--55843
31
3.0
28
83
8
111
19
29
16
34
1.93
55759--55843
29
2.9
29
82
8
109
20
29
16
34
1.94
56783--56815
15
2.2
15
100
0
66
36
6
6
51
1.51
57555--57614
24
2.5
24
100
0
120
33
6
40
20
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62246--62329
29
2.8
30
85
3
107
39
17
25
17
1.92
62755--62796
21
2.0
21
95
0
75
11
19
23
45
1.83
62908--62978
16
4.4
16
77
10
65
14
8
38
39
1.76
62907--62978
32
2.3
31
80
7
90
15
8
37
38
1.77
63149--63187
20
2.0
20
85
10
53
35
5
5
53
1.45
63207--63313
16
6.7
16
77
4
108
8
11
29
50
1.67
64377--64406
5
6.0
5
92
0
51
83
0
16
0
0.65
64778--64825
1
48.0
1
87
0
69
2
4
0
93
0.39
70160--70184
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!