Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012889.1 Corchorus capsularis cultivar CVL-1 contig12910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44526

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1843--1871
14
2.0
15
93
6
51
27
6
3
62
1.37
9670--9696
10
2.7
10
100
0
54
62
18
0
18
1.32
10702--10786
23
3.7
22
80
7
73
36
17
9
36
1.82
10417--11009
22
27.6
22
68
15
194
34
16
9
39
1.81
10959--11009
19
2.6
20
90
6
86
25
17
11
45
1.83
11090--11325
22
10.6
22
72
13
128
34
13
9
42
1.77
11348--11402
22
2.5
23
82
11
71
38
16
5
40
1.72
11363--11413
22
2.3
22
82
0
66
41
19
7
31
1.80
11513--11561
22
2.2
22
88
0
71
42
26
6
24
1.78
11568--11676
22
5.0
22
80
5
105
37
17
11
33
1.85
11840--11877
19
2.0
20
85
15
53
63
2
5
28
1.30
12179--12244
31
2.1
31
86
5
89
48
3
19
28
1.64
12273--12317
19
2.3
19
88
7
63
51
0
6
42
1.28
17273--17409
68
2.0
69
94
2
240
45
8
13
32
1.73
17989--18080
46
2.0
46
100
0
184
45
2
10
41
1.51
18087--18146
31
1.9
31
89
0
93
48
5
15
31
1.66
18168--18212
2
22.5
2
84
8
56
48
2
4
44
1.35
18168--18212
21
2.0
21
87
8
63
48
2
4
44
1.35
26966--27022
16
3.6
16
75
15
55
50
28
12
8
1.69
27166--27226
17
3.7
17
76
8
63
40
34
9
14
1.79
27167--27243
32
2.4
32
91
0
118
38
35
9
16
1.81
32371--32441
18
4.1
18
70
17
60
23
35
5
35
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32366--32428
33
1.9
33
93
0
108
25
38
1
34
1.66
33027--33162
58
2.3
59
85
3
184
51
22
2
23
1.61
35075--35132
30
1.9
30
86
6
82
32
5
34
27
1.79
36706--36761
25
2.2
25
96
0
103
48
16
3
32
1.63
37937--37963
6
4.5
6
100
0
54
14
0
0
85
0.61
40773--40809
2
18.5
2
89
10
58
48
0
2
48
1.15
40765--40810
12
3.5
13
82
11
58
45
0
2
52
1.13

Tables:   1

The End!