Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012890.1 Corchorus capsularis cultivar CVL-1 contig12911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94552

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2895--2940
21
2.2
21
92
0
74
54
8
17
19
1.68
2910--2971
30
2.1
30
96
0
115
46
12
19
20
1.83
3404--3436
16
2.0
17
88
5
50
51
0
6
42
1.26
7009--7052
2
22.0
2
86
9
63
47
0
4
47
1.22
14479--14518
20
2.0
20
85
5
53
65
10
0
25
1.24
15795--15825
14
2.1
15
94
5
55
90
0
9
0
0.46
19408--19470
25
2.6
25
85
7
76
14
9
19
57
1.64
19456--19481
13
2.0
13
100
0
52
23
15
7
53
1.67
21441--21479
3
13.0
3
100
0
78
33
0
0
66
0.92
36242--36270
12
2.4
12
100
0
58
79
6
0
13
0.93
37433--37484
24
2.2
24
82
6
61
34
9
42
13
1.77
42716--42743
2
14.0
2
100
0
56
50
0
0
50
1.00
42934--42998
23
2.9
22
82
13
80
41
9
12
36
1.75
43033--43083
22
2.3
22
80
6
59
31
11
9
47
1.73
43072--43194
22
5.7
22
71
9
74
34
13
13
39
1.84
43073--43210
40
3.4
41
74
11
122
35
13
12
38
1.83
43321--43497
22
8.0
22
70
11
110
35
20
7
36
1.82
43694--44011
66
4.8
64
79
7
223
37
16
10
36
1.83
43755--43945
64
2.9
65
81
7
199
38
16
10
35
1.83
43694--44017
22
14.8
22
73
10
182
37
16
10
35
1.83
48551--48607
19
2.9
19
77
10
62
38
10
19
31
1.86
49882--49922
5
8.2
5
100
0
82
80
0
19
0
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50905--51198
153
2.0
150
85
5
398
36
7
2
53
1.44
55757--55824
31
2.2
32
86
7
95
30
13
4
51
1.60
56130--56167
19
2.0
20
85
15
53
28
5
2
63
1.30
56339--56441
22
4.6
22
71
11
84
34
8
17
38
1.81
56340--56426
44
2.0
43
86
6
122
34
9
18
37
1.83
56499--56622
56
2.2
56
78
8
128
37
6
19
37
1.78
56514--56569
22
2.6
23
77
11
64
37
7
17
37
1.78
56588--56643
22
2.6
22
83
8
71
39
5
17
37
1.73
57007--57057
19
2.6
20
90
6
86
43
13
17
25
1.86
57045--57361
22
14.6
22
71
10
152
39
9
14
35
1.80
56980--57359
22
17.7
21
71
13
116
39
9
16
35
1.81
57235--57337
45
2.3
44
81
8
118
38
7
15
37
1.76
57304--57381
22
3.5
23
81
11
74
35
12
14
37
1.84
68042--68157
57
2.0
58
89
1
180
30
12
21
36
1.90
73202--73266
32
2.0
32
100
0
130
47
15
21
15
1.82
73507--73545
2
19.0
2
94
5
69
48
2
0
48
1.15
78251--78295
22
2.1
22
95
4
83
40
4
15
40
1.67
86040--86099
29
2.1
30
81
18
90
23
6
16
53
1.66
87389--87417
12
2.4
12
100
0
58
86
0
13
0
0.58
93028--93069
20
2.1
20
82
8
50
9
23
23
42
1.83
93656--93699
19
2.2
20
88
4
72
52
9
15
22
1.71

Tables:   1

The End!