Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012894.1 Corchorus capsularis cultivar CVL-1 contig12915, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5387
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:1227 original size:62 final size:62

Alignment explanation


    Indices: 1147--1266  Score: 186
    Period size: 62  Copynumber: 1.9  Consensus size: 62

       1137 CTCTTAAGCA

                                  *                             *         
       1147 AGATCTTCAATTCATATCTTTTGAATAGAGAAAATAGGTAATGAGAGAGTTTCTCCCCTTTT
          1 AGATCTTCAATTCATATCTTTTAAATAGAGAAAATAGGTAATGAGAGAGTTTATCCCCTTTT

                    *    *                             * *            
       1209 AGATCTTCGATTCGTATCTTTTAAATAGAGAAAATAGGTAATGGGGGAGTTTATCCCC
          1 AGATCTTCAATTCATATCTTTTAAATAGAGAAAATAGGTAATGAGAGAGTTTATCCCC

       1267 ATGTAGGTGC


Statistics
Matches: 52,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  62   52  1.00

ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35


Consensus pattern (62 bp):   
AGATCTTCAATTCATATCTTTTAAATAGAGAAAATAGGTAATGAGAGAGTTTATCCCCTTTT
Done.