Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012896.1 Corchorus capsularis cultivar CVL-1 contig12917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27838

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
223--256
16
2.1
16
94
0
59
14
23
14
47
1.82
2516--2573
28
2.1
28
100
0
116
17
31
15
36
1.91
3953--4022
29
2.4
29
85
2
86
38
28
12
20
1.89
4473--4548
29
2.6
29
95
0
134
26
10
26
36
1.89
6169--6212
15
2.9
15
80
16
54
47
2
40
9
1.48
15295--15335
21
2.0
21
100
0
82
34
14
26
24
1.94
15625--15659
6
5.8
6
86
0
52
48
28
20
2
1.63
15625--15663
18
2.1
19
90
4
62
48
28
17
5
1.68
17513--17646
16
8.4
15
73
11
99
35
37
17
10
1.84
17512--17648
32
4.3
32
80
0
139
35
36
17
10
1.84
18362--18392
16
1.9
16
93
0
53
29
32
22
16
1.95
18411--18468
23
2.5
22
78
13
64
32
39
18
8
1.82
18453--18502
16
3.2
16
80
5
66
42
34
14
10
1.78

Tables:   1

The End!