Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012901.1 Corchorus capsularis cultivar CVL-1 contig12922, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23384
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:8674 original size:14 final size:15

Alignment explanation


    Indices: 8634--8675  Score: 50
    Period size: 15  Copynumber: 2.9  Consensus size: 15

       8624 TGCCAATATT

                     **    
       8634 ATAAAAGAATCATCA
          1 ATAAAAGAAAGATCA

                   *       
       8649 ATAAAAGGAAGATCA
          1 ATAAAAGAAAGATCA

                         
       8664 AT-AAAGAAAGAT
          1 ATAAAAGAAAGAT

       8676 TCGACTTCAT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  14    9  0.39
  15   14  0.61

ACGTcount: A:0.62, C:0.07, G:0.14, T:0.17


Consensus pattern (15 bp):   
ATAAAAGAAAGATCA
Done.